Example of BB3 data

Entity categorization (BB-cat)

.txt

[The infections from "Serratia" in the Hospital S. Camillo De Lellis of Roma (Italy) (author's transl)].

.a1

T1 Title 0 104 [The infections from "Serratia" in the Hospital S. Camillo De Lellis of Roma (Italy) (author's transl)].

T2 Bacteria 22 30 Serratia

T3 Habitat 39 68 Hospital S. Camillo De Lellis

.a2

N1 NCBI_Taxonomy Annotation:T2 Referent:613

N2 OntoBiotope Annotation:T3 Referent:OBT:001835

OntoBiotope

[Term]

id: OBT:001835

name: hospital

synonym: "hospital environment" RELATED []

is_a: OBT:001423 ! medical center

NCBI Taxonomy, names.dmp

613 | Serratia | | scientific name |

Entity and event extraction (BB-event)

Knowledge base extraction (BB-kb)

.txt

[The infections from "Serratia" in the Hospital S. Camillo De Lellis of Roma (Italy) (author's transl)].

.a1

T1 Title 0 104 [The infections from "Serratia" in the Hospital S. Camillo De Lellis of Roma (Italy) (author's transl)].

T2 Bacteria 22 30 Serratia

T3 Habitat 39 68 Hospital S. Camillo De Lellis

T4 Geographical 72 76 Roma

T5 Geographical 78 83 Italy

.a2

R1 Lives_In Bacteria:T2 Location:T4

R2 Lives_In Bacteria:T2 Location:T5

R3 Lives_In Bacteria:T2 Location:T3

.txt

[The infections from "Serratia" in the Hospital S. Camillo De Lellis of Roma (Italy) (author's transl)].

.a1

T1 Title 0 104 [The infections from "Serratia" in the Hospital S. Camillo De Lellis of Roma (Italy) (author's transl)].

T2 Bacteria 22 30 Serratia

T3 Habitat 39 68 Hospital S. Camillo De Lellis

.a2

N1 NCBI_Taxonomy Annotation:T2 Referent:613

N2 OntoBiotope Annotation:T3 Referent:OBT:001835

R3 Lives_In Bacteria:T2 Location:T3

OntoBiotope

[Term]

id: OBT:001835

name: hospital

synonym: "hospital environment" RELATED []

is_a: OBT:001423 ! medical center

NCBI Taxonomy, names.dmp

613 | Serratia | | scientific name |