Entity types
Entity groups Entity groups are not used as entity types, but to make more concise the description of the event signature below.
Events Their description follows the syntax: event label list of required arguments (role, list of entity types separated by | ) Binding Functional_Molecule:Functional_Molecule Molecule:Molecule Primary_Structure_Composition DNA_Part:Box|Promoter DNA:DNA Protein_Complex_Composition Amino_Acid_Sequence:Protein|Protein_Family|Protein_Complex|Protein_Domain Protein_Complex:Protein_Complex Presence_At_Stage Functional_Molecule:Functional_Molecule Development:Development_Phase Presence_In_Genotype Molecule: Molecule Element: Biological context Genotype: Genotype (Molecule et Element are mutually exclusive) Sequence_Identity Element1:* Element2:* Interaction Agent: Molecule Target: Molecule Functional_Equivalence Element1: * Element2: * Involvement_In_Process Participant:Molecule Process:Dynamic_Process Localization Functional_Molecule: Functional_Molecule Process:Dynamic_Process Target_Tissue:Tissue (Functional_Molecule et Process are mutuelly exclusive) Family_Membership Element:Gene|Gene_Family|Protein|Protein_Domain|Protein_Family|RNA Family:Gene_Family|Protein_Family|RNA Protein_Domain_Composition Domain:Protein_Domain Product:DNA_Product Occurrence_During Process:Dynamic_Process Development:Development_Phase Occurrence_In_Genotype Process:Dynamic_Process Genotype:Genotype Regulation_Of_Accumulation Agent:* Functional_Molecule:Functional_Molecule Regulation_Of_Development_Phase Agent:* Development:Development_Phase Regulation_Of_Expression Agent:* DNA:DNA Regulation_Of_Molecule_Activity Agent:* Molecule:Molecule Regulation_Of_Process Agent:* Process:Dynamic_Process Regulation_Of_Tissue_Development Agent:* Target_Tissue:Tissue Transcription_Or_Translation Source:DNA|RNA Product:DNA_Product All event types, except Exists_In_Genotype may have the following optional arguments Tissue:Tissue Developmental_Stage:Development_Phase Organism_Genotype:Genotype Environmental_Factor:Environmental_Factor Hormone:Hormone Binary relations Their description follows the syntax: relation label list of required arguments (role, list of entity types separated by | ) Binds_To Functional_Molecule:Functional_Molecule Molecule:Molecule Composes_Primary_Structure DNA_Part:Box|Promoter DNA:DNA Composes_Protein_Complex Amino_Acid_Sequence:Protein|Protein_Family|Protein_Complex|Protein_Domain Protein_Complex:Protein_Complex Exists_At_Stage Functional_Molecule:Functional_Molecule Development:Development_Phase Exists_In_Genotype Molecule: Molecule Element: Biological context Genotype: Genotype (Molecule et Element are mutually exclusive) Has_Sequence_Identical_To Element1:* Element2:* Interacts_With Agent: Molecule Target: Molecule Is_Functionally_Equivalent_To Element1: * Element2: * Is_Involved_In_Process Participant:Molecule Process:Dynamic_Process Is_Localized_In Functional_Molecule: Functional_Molecule Process:Dynamic_Process Target_Tissue:Tissue (Functional_Molecule et Process are mutuelly exclusive) Is_Member_Of_Family Element:Gene|Gene_Family|Protein|Protein_Domain|Protein_Family|RNA Family:Gene_Family|Protein_Family|RNA Is_Protein_Domain_Of Domain:Protein_Domain Product:DNA_Product Occurs_During Process:Dynamic_Process Development:Development_Phase Occurs_In_Genotype Process:Dynamic_Process Genotype:Genotype Regulates_Accumulation Agent:* Functional_Molecule:Functional_Molecule Regulates_Development_Phase Agent:* Development:Development_Phase Regulates_Expression Agent:* DNA:DNA Regulates_Molecule_Activity Agent:* Molecule:Molecule Regulates_Process Agent:* Process:Dynamic_Process Regulates_Tissue_Development Agent:* Target_Tissue:Tissue Transcribes_Or_Translates_To Source:DNA|RNA Product:DNA_Product Is_Linked_To Agent:* Target:* |